Profile Comparison
In 1987 Michael Gribskov, Andrew McLachlan and David Eisenberg introduced the method of profile comparison for identifying distant similarities between proteins. Rather than using a single sequence, profile methods use a multiple sequence alignment to encode a profile which contains information about the conservation level of each residue. These profiles can then be used to search collections of sequences to find sequences that are related. Profiles are also known as Position Specific Scoring Matrices (PSSMs). In 1993 a probabilistic interpretation of profiles was introduced by David Haussler and colleagues using hidden Markov models. These models have become known as profile-HMMs.
In recent years methods have been developed that allow the comparison of profiles directly to each other. These are known as profile-profile comparison methods.
Read more about this topic: Sequence Analysis
Famous quotes containing the words profile and/or comparison:
“Nature centres into balls,
And her proud ephemerals,
Fast to surface and outside,
Scan the profile of the sphere;
Knew they what that signified,
A new genesis were here.”
—Ralph Waldo Emerson (1803–1882)
“The comparison between Coleridge and Johnson is obvious in so far as each held sway chiefly by the power of his tongue. The difference between their methods is so marked that it is tempting, but also unnecessary, to judge one to be inferior to the other. Johnson was robust, combative, and concrete; Coleridge was the opposite. The contrast was perhaps in his mind when he said of Johnson: “his bow-wow manner must have had a good deal to do with the effect produced.””
—Virginia Woolf (1882–1941)