Black (horse) - Genetic Identification

Genetic Identification

In the study and discussion of equine coat color genetics, black is considered a "base" color, as is red. This designation makes the effects of other coat color genes easier to understand. Coat colors that are designated "black-based" include grullo (also called blue dun), smoky black, smoky cream, silver black, classic champagne, and blue roan. Sometimes this designation includes the bay family: bay, seal brown, buckskin, bay dun, silver bay, perlino, amber champagne, and bay roan. Horses with a black-based coat may also have added spotting patterns including leopard patterns seen on Appaloosas and the pinto coloring known as piebald.

The genetics behind the black horse are relatively simple. The color black is primarily controlled by two genes: Extension and Agouti. The functional, dominant allele of the extension gene (labeled "E") enables the horse to produce black pigment in the hair. Without this gene (homozygous recessive condition "ee"), the coat is devoid of black pigment and the horse is some shade of red. The functional, dominant allele (or alleles) of the agouti gene (labeled "A") enable the horse to restrict black pigment to certain parts of the coat, notably the legs, mane and tail, allowing the underlying red to show through, resulting in bay coloring. Without this gene (homozygous recessive condition "aa"), any black pigment present is unrestricted, resulting in a uniformly black coat.

Thus a black horse has at least one copy of the functional, dominant "E" allele and two copies of the non-functional, recessive "a" allele. A mature true black horse can be safely said to possess at least one dominant extension gene (EE or Ee); and has no other dominant genes (such as agouti, gray, or any of the dilution factors) that further modify color.

A DNA test, which uses hair with the root intact, has been developed to test for the Extension and Agouti genotypes. However, the terminology can be manipulated. Unfortunately, the extension test is often mislabeled as the "black test", leading to confusion. Neither the extension test nor the agouti test alone can identify a black horse. Together, they can determine that a horse that appears visually black is not actually a dark bay or liver chestnut.

Horses described as "homozygous black" are simply homozygous for the dominant extension gene (EE); they are homozygous "not-red". Such horses are only "guaranteed" to never produce a red foal. The actual horse may carry additional genetic modifiers that could make it bay, buckskin, gray, bay roan, perlino, silver bay, and so on. A visually black horse that is tested "homozygous black" is EE and has no other color modifiers.

However, it has become popular for individuals owning a horse that is homozygous for the extension gene (EE) to claim that the horse will "throw black." But, generally speaking, one horse cannot be guaranteed to "throw black" with all mates. The mate of a true black horse may contribute the a dominant Agouti allele, which will suppress the black coloring and result in a bay foal. If a black is bred to a gray, the ensuing foal may also be gray. Other modifiers present in the mate may produce additional dilution colors or spotting patterns. Nonetheless certain individual pairings with appropriate DNA testing can, in some cases, be guaranteed to produce black.