Vijay Pande - Publications

Publications

As of October 2012, Pande has authored or co-authored 283 scientific publications. He has an h-index of 56 and an i10-index of 151 from 11,140 total citations mainly based on his work with Folding@home. His 10 most-cited works are:

• Snow, C. D.; Nguyen, H.; Pande, V. S.; Gruebele, M. (2002). "Absolute comparison of simulated and experimental protein-folding dynamics". Nature 420 (6911): 102–106. doi:10.1038/nature01160. PMID 12422224.
• Sorin, E. J.; Pande, V. S. (2005). "Exploring the Helix-Coil Transition via All-Atom Equilibrium Ensemble Simulations". Biophysical Journal 88 (4): 2472–2493. doi:10.1529/biophysj.104.051938. PMC 1305346. PMID 15665128. //www.ncbi.nlm.nih.gov/pmc/articles/PMC1305346/.
• Du, R.; Pande, V. S.; Grosberg, A. Y.; Tanaka, T.; Shakhnovich, E. S. (1998). "On the transition coordinate for protein folding". The Journal of Chemical Physics 108: 334. doi:10.1063/1.475393.
• Pande, V. S.; Rokhsar, D. S. (1999). "Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G". Proceedings of the National Academy of Sciences of the United States of America 96 (16): 9062–9067. PMC 17732. PMID 10430895. //www.ncbi.nlm.nih.gov/pmc/articles/PMC17732/.
• Pande, V. S.; Baker, I.; Chapman, J.; Elmer, S. P.; Khaliq, S.; Larson, S. M.; Rhee, Y. M.; Shirts, M. R. et al. (2003). "Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing". Biopolymers 68 (1): 91–109. doi:10.1002/bip.10219. PMID 12579582.
• Kohn, J. E. (2004). "Random-coil behavior and the dimensions of chemically unfolded proteins". Proceedings of the National Academy of Sciences 101 (34): 12491–12496. doi:10.1073/pnas.0403643101.
• Shirts, M.; Pande, V. S. (2000). "COMPUTING: Screen Savers of the World Unite!". Science 290 (5498): 1903–1904. doi:10.1126/science.290.5498.1903. PMID 17742054.
• Shirts, M. R.; Pitera, J. W.; Swope, W. C.; Pande, V. S. (2003). "Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteins". The Journal of Chemical Physics 119 (11): 5740. doi:10.1063/1.1587119.
• Zagrovic, B.; Snow, C. D.; Shirts, M. R.; Pande, V. S. (2002). "Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing". Journal of Molecular Biology 323 (5): 927–937. doi:10.1016/S0022-2836(02)00997-X. PMID 12417204.
• Pande, V. S.; Grosberg, A. U.; Tanaka, T.; Rokhsar, D. S. (1998). "Pathways for protein folding: Is a new view needed?". Current opinion in structural biology 8 (1): 68–79. PMID 9519298.