- Absent Friends (2004)
- A Bag of Anteaters
- Action Girl Comics #1-19 (1994 – 2001)
- Adora Gone and The Electric Electric Elephant (2010)
- Awkward
- Autumn #1-? (2004 – present)
- Babyhead Magazine #1 (2004)
- Babysitter
- Bad Art Collection
- Barrabas (1986)
- Bear #1-10 (by Jamie Smart, 2004 - 2005)
- Beer and Roaming in Las Vegas
- Bill The Clown
- Black Heart Billy
- Bombaby Screen Goddess (by Antony Mazzotta)
- Byron: Mad, Bad, and Dangerous (by Karl Christian Krumpholz, 2007)
- Camping with Bigfoot
- Captain Dingleberry
- The Cat With The Really Big Head
- Cemetarians #1-?
- Charm School
- Chickenhare
- Chumble Spuzz (by Ethan Nicolle)
- The Clarence Principle (by Fehed Said and Shari Chankhamma, 2007)
- Cocopiazo
- The Comical Tragedy of Punch and Judy
- Comic Book Heaven
- Corporate Ninja (2005)
- Dead Eyes Open (by Roy Boney, 2005)
- Definition
- Dim Witted Darryl
- Dork by Evan Dorkin (1993-)
- Dr. Grave (by Ed Clayton
- Eating Steve: A Love Story
- Egg Story
- Elmer
- Emily and the Intergalactic Lemonade Stand
- Emo Boy
- Evenfall (by Pete Stathis, 2004)
- Everwinds
- Everything Can Be Beaten
- Farewell Georgia
- Fillerbunny (by Jhonen Vasquez)
- Fishmasters
- Gargoyles (a continuation of the TV series)
- Ghouly Boys
- Gloomcookie #1-28 (by Serena Valentino and Vincent Batignole)
- The Griffin (by Dan Vado)
- Halo and Sprocket #1-4 (2002)
- Haunted Mansion
- Heart of a Corpse (by Justin Sane)
- Hectic Planet (previously known as Pirate Corp$)
- Hero Sandwich #1-5 (1987-1989)
- Highway 13
- Hummingbird
- Hsu and Chan (by Jeremy "Norm" Scott)
- I Feel Sick #1-2 (by Jhonen Vasquez, 1999-2000)
- Imp
- Iliad #1-2
- It's Science With Doctor Radium (1986)
- Jellyfist (by Jhonen Vasquez and Jenny Goldberg)
- Jet Comics #1-3
- Jet Pack Pets
- Johnny the Homicidal Maniac #1-7 (by Jhonen Vasquez, 1995-1997)
- Kitsune Tales #1 (by Woodrow Phoenix and Andi Watson, 2003)
- Knights of the Living Dead
- Lenore #1-13 (by Roman Dirge, 1998-)
- Life of a Fetus #1-7
- Likewise #1-2 (2002)
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- Little Gloomy #1-6 (1999)
- Little Gloomy Adventures oneshot (2003)
- Little Gloomy Crypt of Creepts oneshot (2004)
- Little Gloomy Hallowe'en Special oneshot
- Little Scrowlie
- Love In Tights
- Lowlife
- Metamorphosis Odyssey (by Jim Starlin)
- Midnight Sun
- Milk & Cheese
- Mister Blank
- Model A
- The Monsters In My Tummy
- Mr. Night
- MuZz
- My Monkey's Name is Jennifer (2002)
- Next Exit
- Nightmares & Fairy Tales (by Serena Valentino and Camilla D'Errico)
- Nil: A Land Beyond Belief
- No Hope
- Oddjob
- On the Bus
- Outlook:Grim #1-6 (2003-2004)
- The Pants Ant Trouser Hour
- Paris (by Andi Watson, 2005-2006)
- Patty Cake
- Pinocchio: Vampire Slayer
- Pirate Club
- The Price
- Private Beach #1-7? (2002?)
- The Replacement God
- Rex Libris
- Rogue Satellite Comics #1-3 (Reilly & Atkinson, 1996-1997)
- The Royal Historian of Oz
- Samurai Jam #3-4 (by Andi Watson, 1993, previously Samurai Funnies, published by Solson Publications)
- Samurai Penguin #1-8 (1986-1988)
- Samurai Penguin: Food Chain Follies #1
- Sanctuary
- Screenplay #1
- Screwtooth #1-? (2006)
- Serenity Rose
- Shadoweyes (by Ross Campbell, 2010)
- Shadow Star #3 (1986; #1-2 published by Savage Graphics)
- Sidney Mellon's Thunderskull!
- The Sister's Luck (by Shari Chankhamma, 2010)
- Skaggy The Lost #1-4, trade paperback
- Skeleton Girl Comics #1-3
- Skeleton Key (by Andi Watson, 1995)
- Sky Ape #1-4
- Slacker Comics
- Slow News Day (by Andi Watson, 2001)
- Street Angel #1-5
- Sparks
- Squee #1-4 ( Jhonen Vasquez 1997 – 1998)
- SugarBuzz
- Swerve #1-2 (by "Downer" creator Kyle S. Hunter)
- The Jam #2-6, 1989-1990 (came from Matrix Graphics, moved to Dark Horse Comics)
- The Super Scary Monster Show: Featuring Little Gloomy
- Tales from the Heart
- Tron: The Ghost in the Machine (2006-2008; miniseries following up the film and the video game TRON 2.0)
- The Trouble With Igor #1 (2006)
- Truth Serum
- Ubu Bubu #1-4 (2008 - 2009)
- Ursa Minors #1-? (2006)
- Vaistron #1-5 (2005)
- The Vesha Valentine Story (by Des Taylor, 2011)
- The Waiting Place
- Weird Science (1986)
- Where's It At, Sugar Kat?
- Whistles (by Andrew Hussie, 2007)
- Wonderland
- Zombies Calling (by Faith Erin Hicks, 2007)
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