Theory
A replicator works by rearranging subatomic particles, which are abundant everywhere in the universe, to form molecules and arrange those molecules to form the object. For example, to create a pork chop, the replicator would first form atoms of carbon, hydrogen, nitrogen, etc., then arrange them into amino acids, proteins, and cells, and assemble the particles into the form of a pork chop.
This process requires the destructive conversion of bulk matter into energy and its subsequent reformation into a pre-scanned matter pattern. In principle, this is similar to the transporter, but on a smaller scale. However, unlike transporters, which duplicate matter at the quantum level, replicators must be capable of a large number of different materials on demand. If patterns were to be stored at the quantum level, an impossible amount of data storage (or a set of original copies of the materials) would be required. To resolve this, patterns are stored in memory at the molecular level.
The drawback of doing so is that it is impossible to replicate objects with complicated quantum structures, such as living beings, dilithium, gold, or latinum. (However, in the TNG episode "Allegiance", aliens used their version of replicators to create a Picard impostor.) Additionally, read/write errors cause a number of single-bit errors to occur in replicated materials. Though usually undetectable to human senses, computer scanning can be used to reveal these discrepancies, and they may explain the frequent complaint (by some gourmets and connoisseurs) that replicated food and beverages suffer from substandard taste. These errors also may cause a nontoxic material to become toxic when replicated, or create strains of deadly viruses and bacteria from previously harmless ones.
Read more about this topic: Replicator (Star Trek)
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