Promoter (genetics) - Promoter Elements

Promoter Elements

  • Core promoter - the minimal portion of the promoter required to properly initiate transcription
    • Includes Transcription Start Site (TSS) and elements directly upstream
    • A binding site for RNA polymerase
      • RNA polymerase I: transcribes genes encoding ribosomal RNA
      • RNA polymerase II: transcribes genes encoding messenger RNA and certain small nuclear RNAs
      • RNA polymerase III: transcribes genes encoding tRNAs and other small RNAs
    • General transcription factor binding sites, e.g. TATA box
  • Proximal promoter - the proximal sequence upstream of the gene that tends to contain primary regulatory elements
    • Approximately 250 base pairs upstream of the start site
    • Specific transcription factor binding sites
  • Distal promoter - the distal sequence upstream of the gene that may contain additional regulatory elements, often with a weaker influence than the proximal promoter
    • Anything further upstream (but not an enhancer or other regulatory region whose influence is positional/orientation independent)
    • Specific transcription factor binding sites

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