Analysis Software
- LDHat
- Haploview
- LdCompare— open-source software for calculating LD.
- PyPop
- SNP and Variation Suite- commercial software with interactive LD plot.
- GOLD - Graphical Overview of Linkage Disequilibrium
- TASSEL -software to evaluate linkage disequilibrium, traits associations, and evolutionary patterns
Read more about this topic: Linkage Disequilibrium
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“A commodity appears at first sight an extremely obvious, trivial thing. But its analysis brings out that it is a very strange thing, abounding in metaphysical subtleties and theological niceties.”
—Karl Marx (1818–1883)
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