Season Two: (2003-2004)
| # | # | Title | Original Airdate |
|---|---|---|---|
| 1 | 21 | "Letters From the Other Side (part 1)" | October 10, 2003 (2003-10-10) |
| Markus, Erin, and Jeremiah have been taken into captivity at Valhalla Sector. Jeremiah endures torture to keep VS from obtaining the vaccine for the Big Death. Meanwhile, Kurdy must decide whether to trust Lee Chen again. Chen admits he was a double agent, but claims to be on Thunder Mountain's side, and he has a plan to rescue their friends. | |||
| 2 | 22 | "Letters From the Other Side (part 2)" | October 17, 2003 (2003-10-17) |
| Lee Chen plans to release the Big Death again, but can he keep it under control? Kurdy takes on the responsibility of command and leads men into battle, to make sure the virus is contained. The mysterious Mr. Smith is determined to help him. | |||
| 3 | 23 | "Strange Attractors" | October 24, 2003 (2003-10-24) |
| Jeremiah and Libby go to Milhaven to save the leaders, including Theo. Libby, with her previous knowledge of Milhaven helps Jeremiah save everybody by posing as members of Valhalla Sector. It's decided that Jeremiah will later oversee the rebuilding of Milhaven, once things calm down. | |||
| 4 | 24 | "Deus Ex Machina" | October 31, 2003 (2003-10-31) |
| Markus tried to bring order out of chaos but is meeting resistance from the new young leaders. Theo is his unlikely choice for a possible ally but she has a surprising reason for being preoccupied. One person everyone at the leaders' meeting seems to have heard of, but never seen, is the mysterious Daniel who controls an area on the East Coast. When his representative arrives, Theo makes an astonishing declaration that sets new wheels in motion. | |||
| 5 | 25 | "Rites of Passage" | October 31, 2003 (2003-10-31) |
| Devon arrives at Thunder Mountain and Jeremiah is looking forward to spending time with him, but what happened to Jeremiah's mother? Libby knows and gives Jeremiah a letter Devon entrusted to her long ago. | |||
| 6 | 26 | "The Mysterious Mister Smith" | November 7, 2003 (2003-11-07) |
| Jeremiah begins his job of supervising Millhaven, but finds he's tired of being a hero and just wants to let things slide. However, disturbing new activity involving Daniel's group forces him to make a stand again. Back at Thunder Mountain, Kurdy finds Smith has been lying, spying, and telling stories of Kurdy's operations to strangers... but has a very good reason for all of it. | |||
| 7 | 27 | "Voices in the Dark" | November 7, 2003 (2003-11-07) |
| Libby saves Jeremiah from an assassination attempt plotted by Daniel's forces. In the aftermath, he and Libby start a physical relationship, and Jeremiah covertly goes against Markus' orders by asking Kurdy and Smith go with him inside Daniel's territory to New York City. There they meet a resistance who ask their help in smuggling out a defector from Daniel's inner circle. | |||
| 8 | 28 | "Crossing Jordan" | September 3, 2004 (2004-09-03) |
| The Alliance recruits another town, Ridgeway, to its side, but when Sims, one of the leaders in Daniel's army hears about it, he decides to make an example out of them, enslaving the populace and burning the town. Smith struggles with information from God about Libby. When he's left alone with her during Sims' attack on another town considering the Alliance, he makes a startling discovery, and must take drastic action. | |||
| 9 | 29 | "Running on Empty" | September 3, 2004 (2004-09-03) |
| Jeremiah sets off to find Sims to avenge Libby's death. He later joins Kurdy and Markus to try to find Daniel's raiders. Mister Smith gives Erin a message from God. | |||
| 10 | 30 | "The Question" | September 10, 2004 (2004-09-10) |
| Smith tells the group they will each be granted a miracle, however all the men doubt Smiths prediction. Marcus enlists the alliance towns leaders for recruits of soldiers and Kurdy begin to train an army against Daniel and his men. | |||
| 11 | 31 | "The Past Is Prologue" | September 10, 2004 (2004-09-10) |
| Jeremiah gets captured in a town that looks just like towns did before the Big Death, but he tricks his way free with the other captives. | |||
| 12 | 32 | "The Face in the Mirror" | September 17, 2004 (2004-09-17) |
| A Big Death survivor Frederick Monash knows the truth about Daniel. Thunder Mountain wants to find Frederick before Daniel's forces can kill him. The truth: Daniel isn't real! The Leaders of Daniel agree to start war against the Alliance. | |||
| 13 | 33 | "State of the Union" | September 17, 2004 (2004-09-17) |
| Jeremiah, Kurdy, and Mr. Smith bring radios to a town that, unknown to them, are part of the plans of Daniel's army to strike against Thunder Mountain's alliance by blocking all comunications. In a fit of guilt Smith admits to Kurdy what happened to Libby. The Army of Daniel is prepared to strike at Thunder Mountain. | |||
| 14 | 34 | "Interregnum (part 1)" | September 24, 2004 (2004-09-24) |
| Someone on the inside has been sabotaging things at Thunder Mountain and Lee Chen is in charge of the investigation. Mister Smith leads Jeremiah and Kurdy to a small town full of smart children, who will need defending. Jeremiah learns the truth about Libby's death, and Daniel's army strikes at Thunder Mountain itself, both inside and out. | |||
| 15 | 35 | "Interregnum (part 2)" | September 24, 2004 (2004-09-24) |
| Markus matches wits with Sims, and he and Erin take on those inside the mountain. Kurdy leads the defense of Millhaven against Daniel's Army. Jeremiah sets out to finally kill Sims. Smith reunites with his daughter. Frank documents it all. |
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