- Within and Without (1855)
- Poems (1857)
- Phantastes (1858)
- Cross Purposes (1862)
- David Elginbrod (1863) (republished as The Tutor's First Love)
- The Portent (1864)
- Adela Cathcart (1864) (contains The Light Princess, The Shadows, The Giant's Heart, My Uncle Peter, A Journey Rejourneyed and other shorter stories)
- A Hidden Life and Other Poems (1864)
- Alec Forbes of Howglen (1865) (republished as The Maiden's Bequest)
- Annals of a Quiet Neighbourhood (1867)
- Unspoken Sermons (1867)
- Dealings with the Fairies (1867) (contains The Golden Key)
- The Disciple and Other Poems (1867)
- Guild Court: A London Story (1868)
- Robert Falconer (1868) (republished as The Musician's Quest)
- England's Antiphon (1868, 1874)
- The Seaboard Parish (1869) (sequel to Annals of a Quiet Neighbourhood)
- The Miracles of Our Lord (1870)
- At the Back of the North Wind (1871)
- Ranald Bannerman's Boyhood (1871)
- Works of Fancy and Imagination (1871)
- Wilfrid Cumbermede (1871, 1872)
- The Vicar's Daughter (1871, 1872)
- The Princess and the Goblin (1872)
- The History of Gutta-Percha Willie, the Working Genius (1873)
- Malcolm (1875) (republished as a two-volume work containing The Fisherman's Lady and The Marquis' Secret)
- The Lost Princess (1875) (alternative title: The Wise Woman: a Parable)
- Exotics (1876)
- St. George and St. Michael (1876)
- Thomas Wingfold, Curate (1876) (republished as The Curate's Awakening)
- The Marquis of Lossie (1877) (republished asThe Marquis’ Secret)
- Paul Faber, Surgeon (1879) (republished asThe Lady's Confession)
- Sir Gibbie (1879) (republished as The Baronet's Song)
- A Book of Strife, in the Form of the Diary of an Old Soul (1880)
- Mary Marston (1881) (republished as A Daughter's Devotion)
- Warlock O' Glenwarlock (also entitled The Laird's Inheritance or Castle Warlock)
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- Weighed and Wanting (1882) (republished as A Gentlewoman's Choice)
- The Gifts of the Child Christ and Other Tales (1882)
- Orts: Chiefly Papers on the Imagination, and on Shakespeare (1882)
- The Day Boy and the Night Girl (1882)
- The Princess and Curdie (1883, sequel to ' The Princess and the Goblin ')
- Donal Grant (1883) (republished as The Shepherd's Castle) Companion story of Gibbie and his friend Donal
- A Threefold Cord: Poems by Three Friends (1883)
- Stephen Archer and Other Tales (1883)
- Preface to Letters from Hell by LWJS (1884)
- The Tragedie of Hamlet, Prince of Denmarke: a Study with the Test of the Folio of 1623 (1885)
- Unspoken Sermons, Second Series (1885)
- What's Mine's Mine (1886) (republished as The Highlander's Last Song)
- Poems (1887)
- Home Again, a Tale (1887) (republished as The Poet's Homecoming)
- The Elect Lady (1888) (republished as The Landlady's Master)
- Unspoken Sermons, Third Series (1889)
- A Rough Shaking (1891)
- There and Back (1891 (republished as The Baron's Apprenticeship)
- The Flight of the Shadow (1891)
- A Cabinet of Gems (1891)
- Life Essential: The Hope of the Gospel (1892)
- Heather and Snow (1893) (republished as The Peasant Girl's Dream)
- A Dish of Orts (1893)
- The Poetical Works (1893) (including many previously unpublished poems)
- Scotch Songs and Ballads (1893)
- Lilith (1895)
- Salted with Fire (1896) (republished as The Minister's Restoration)
- Far above Rubies (1898)
- Evenor (1972 (a collection of three stories)
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