- 6th Air Defense Missile Squadron, 56 IM-99A
- Activated on 1 February 1959
- Assigned to: New York Air Defense Sector
- Inactivated 15 December 1964
- Stationed at: Suffolk County AFB, New York
- Bomarc site located 3 miles SW at 40°50′00″N 072°40′51″W / 40.8333333°N 72.68083°W / 40.8333333; -72.68083 (6th ADMS)
- 22d Air Defense Missile Squadron: 28 IM-99A/28 IM-99B
- Activated on 15 September 1959
- Assigned to: Washington Air Defense Sector
- Reassigned to: 33d Air Division, 1 April 1966
- Reassigned to: 20th Air Division, 19 November 1969
- Inactivated: 31 October 1972
- Stationed at: Langley AFB, Virginia
- Bomarc site located 3 miles WNW at 37°05′57″N 076°28′47″W / 37.09917°N 76.47972°W / 37.09917; -76.47972 (22d ADMS)
- 26th Air Defense Missile Squadron: 28 IM-99A/28 IM-99B
- Activated 1 March 1959
- Assigned to: Boston Air Defense Sector
- Reassigned to: 35th Air Division, 1 April 1966
- Reassigned to: 21st Air Division, 19 November 1969
- Inactivated: 30 April 1972
- Stationed at: Otis AFB, Massachusetts
- Bomarc site located 1 mile NNW at 41°40′56″N 070°32′21″W / 41.68222°N 70.53917°W / 41.68222; -70.53917 (26th ADMS)
- 30th Air Defense Missile Squadron: 28 IM-99A
- Activated on 1 June 1959
- Assigned to Bangor Air Defense Sector
- Inactivated: 15 December 1964
- Stationed at Dow AFB, Maine
- Bomarc site located 4 mils NNE at 44°51′11″N 068°47′11″W / 44.85306°N 68.78639°W / 44.85306; -68.78639 (30th ADMS)
- 35th Air Defense Missile Squadron: 56 IM-99B
- Activated 1 June 1960
- Assigned to Syracuse Air Defense Sector
- Reassigned to: Detroit Air Defense Sector, 4 September 1963
- Reassigned to: 34th Air Division, 1 April 1966
- Reassigned to: 35th Air Division, 15 September 1969
- Inactivated: 31 December 1969
- Stationed at: Niagara Falls Air Force Missile Site, New York
- Bomarc site located at 43°07′03″N 078°56′49″W / 43.1175°N 78.94694°W / 43.1175; -78.94694 (35th ADMS)
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- 37th Air Defense Missile Squadron: 28 IM-99B
- Activated 1 March 1960
- Assigned to 30th Air Division
- Reassigned to: Sault Sainte Marie Air Defense Sector, 1 April 1960
- Reassigned to: Duluth Air Defense Sector, 1 October 1963
- Reassigned to: 29th Air Division, 1 April 1966
- Reassigned to: 23d Air Division, 19 November 1969
- Inactivated 31 July 1972
- Stationed at: Kincheloe AFB, Michigan
- Bomarc site located 9 miles NW at 46°20′53″N 084°48′18″W / 46.34806°N 84.805°W / 46.34806; -84.805 (37th ADMS)
- 46th Air Defense Missile Squadron: 28 IM-99A/56 IM-99B
- Activated 1 January 1959
- Assigned to New York Air Defense Sector
- Reassigned to: 21st Air Division, 1 April 1966
- Reassigned to: 35th Air Division, 1 December 1957
- Reassigned to: 21st Air Division, 19 November 1969
- Inactivated 31 October 1972
- Stationed at: McGuire AFB, New Jersey
- Bomarc site located 4 miles ESE at 40°02′06″N 074°26′29″W / 40.035°N 74.44139°W / 40.035; -74.44139 (46th ADMS)
- 74th Air Defense Missile Squadron: 28 IM-99B
- Activated 1 April 1960
- Assigned to Duluth Air Defense Sector
- Reassigned to: 29th Air Division, 1 April 1966
- Reassigned to: 23d Air Division, 19 November 1969
- Inactivated 30 April 1972
- Stationed at: Duluth International Airport, Minnesota
- Bomarc site located 10 miles NE at 46°55′56″N 091°53′00″W / 46.93222°N 91.8833333°W / 46.93222; -91.8833333 (74th ADMS)
- 4751st Air Defense Missile Squadron
- Activated 15 January 1959
- Assigned to 73d Air Division (Weapons)
- Reassigned to: 32d Air Division, 1 October 1959
- Reassigned to: Montgomery Air Defense Sector, 1 July 1962
- Reassigned to: Air Defense, Tactical Air Command, 1 September 1979
- Inactivated 30 September 1979
- Stationed at: Eglin Auxiliary Field #9 (Hurlburt Field), Florida
- Bomarc site located on Santa Rosa Island at 30°23′18″N 086°48′28″W / 30.38833°N 86.80778°W / 30.38833; -86.80778 (4751st ADMS)
- Bomarc site located at Eglin Auxiliary Field #5 (Piccolo Field) at 30°35′37″N 086°37′18″W / 30.59361°N 86.62167°W / 30.59361; -86.62167
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