Background
A pretext for the crisis came from the management of a dispute within the military of East Timor (F-FDTL), when soldiers from the western part of the country claimed that they were being discriminated against, in favour of soldiers from the eastern part of the country. The Lorosae (Tetum for easterners) formed the largest part of Falintil, the guerrilla resistance movement which resisted Indonesian authority, and which in turn, after final independence in 2002, formed the largest part of F-FDTL. In contrast the Loromonu (Tetum for westerners) were less prominent in the resistance, and are less favoured in the present military structure. There has also been tension between the military and the police force, composed of more westerners and even former members of the Indonesian military.
404 soldiers, out of the regular strength of about 1500, deserted their barracks on 8 February 2006, joined by 177 more on 25 February. The soldiers were ordered to return in March, but refused, and were relieved of duty. The soldiers were later joined by some members of the police force, and were initially led by Lt. Gastão Salsinha.
The Foreign Minister, José Ramos-Horta, announced early in April that a panel would be established to hear the complaints of the former soldiers, but added that "They are not going to be brought back into the army, except on a case-by-case basis when we establish the responsibilities of each individual in this whole incident".
There were political motivations behind the attacks on soldiers and the government. Those initiating the violence and killings declared loyalty to the then President Xanana Gusmao, who wanted to replace Prime Minister and Fretilin leader Mari Alkatiri. This is, in fact, what happened, after Alkatiri's forced resignation, an interim government over 2006–07 and then elections in 2007. An Australian television report (Four Corners) was used to force the resignation of Prime Minister Alkatiri
Read more about this topic: 2006 East Timorese Crisis
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